Mine hits the cover and wont let me bolt in the compressor. Im using Mustang covers. Id hate to try to grind on one or the other and ruin something. I cant grind on the bracket, or Ill throw off the belt alignment.
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We need a pic. Even with aftermarket covers, my compressor doesn't touch the valve cover. Plenty of room.
It just took a BFH, and screwdriver to bend the brackets into place. carry on.
I had the same issue with with the Ford Motorsport covers. IF you intend to keep the A/C like I did, you can lightly grind the comp and a do a light grind on the VC followed with a good buffing.
Glad you got it fixed. We've all been through it.